Wednesday, October 15, 2025

Time Event (+)
09:30 - 10:20 Welcome Coffee (Learning Lab - BU science)  
10:20 - 10:30 Openning and Welcome Speech (Salle de conférences - BU science) - Hugues Berry  
10:30 - 11:00 Machine learning for integrative single-cell genomics (Salle de conférences - BU science) - Laura Cantini, Pasteur Institute, Paris, France  
11:00 - 12:00 Kernel-based perturbation testing for single-cell data (Salle de conférences - BU science) - Franck Picard, Ecole Normale Supérieure, Lyon, France  
12:00 - 14:00 Lunch (Domus Restaurant)  
14:00 - 14:30 Statistical methods for spatial transcriptomics (Salle de conférences - BU science) - Xiang Zhou, University of Michigan, Ann Arbor, USA  
14:30 - 15:30 Towards scalable and interactive pipelines for spatial biology (Salle de conférences - BU science) - Yvan Saeys, Ghent University, Belgium  
15:30 - 16:10 Coffee break (Learning Lab - BU science)  
16:10 - 16:55 Advances in Spatial Transcriptomics and Computational Approaches (Salle de conférences - BU science) - Guillaume Marcy, Université Claude Bernard Lyon 1, France  
16:55 - 17:40 Hands-On Spatial Transcriptomics: from data to insight (Salle de conférences - BU science) - Sergio Sarnataro, Ecole Normale Supérieure, Lyon, France  

Thursday, October 16, 2025

Time Event (+)
09:30 - 10:30 Transforming neural networks one cortical layer at a time (Salle de conférences - BU science) - Genevieve Stein O’Brien, Johns Hopkins University, USA  
10:30 - 11:00 SpatialData: an open and universal data framework for spatial omics (Salle de conférences - BU science) - Quentin Blampey, Paris-Saclay University, France  
11:00 - 11:30 Coffee break (Learning Lab - BU science)  
11:30 - 12:30 Multi-modal learning for single-cell data integration (Salle de conférences - BU science) - Laura Cantini, Pasteur Institute, Paris, France  
12:30 - 14:30 Lunch (Domus Restaurant)  
14:30 - 15:30 Deep learning and computational methods for spatial data analysis (Salle de conférences - BU science) - Quentin Blampey, Paris-Saclay University, France  
15:30 - 16:10 Coffee break (Learning Lab - BU science)  
16:10 - 17:10 Towards multimodal and context-aware representations of the tumor microenvironment (Salle de conférences - BU science) - Marianna Rapsomaniki, Lausanne University Hospital, Switzerland  

Friday, October 17, 2025

Time Event (+)
09:30 - 10:30 Mapping spatially variable genes at cell type and subcellular resolution in spatial transcriptomics (Salle de conférences - BU science) - Xiang Zhou, University of Michigan, Ann Arbor, USA  
10:30 - 11:00 Coffee break (Learning Lab - BU science)  
11:00 - 12:00 Generative AI modelling of spatial transcriptomics data to prioritise cellular states and predict therapeutic responses (Salle de conférences - BU science) - Daniyal Jafree, UCL & Wellcome Sanger, UK  
12:00 - 14:00 Lunch - End of the workshop (Domus Restaurant)  
CNRS CCSD Sciencesconf